Resources
These databases represent resources invoving members of the Feedstocks Division at JBEI.
Rice Kinase Database
The Rice Kinase Database was created to host functional genomic information gathered as part of a large NSF funded rice kinase proteomics project. Our goal is to integrate disparate data sets into a logical, user friendly format. To accomplish this, we have developed a platform to display user selected functional genomic data on a phylogenetic tree.
Maintained and hosted by the Ronald Lab, UC Davis.
Rice GT Database
The Rice GT Database was created to integrate and host functional genomic information for all putative rice Glycosyltransferases (GTs), as a part of Joint BioEnergy Institute (JBEI). The database contains information on 769 putative rice GTs (gene models). GTs were identified from the rice genome according to sequence similarity searches based on the Carbohydrate Active enZymes (CAZy) database. Our goal is to integrate disparate data sets into a logical, user-friendly format. To accomplish this, we have developed a platform to display user-selected functional genomic data on a phylogenetic tree, including sequence information, mutant line information, expression data and so on. The database also includes an interactive chromosomal map showing the positions of all rice GTs. Links are provided to the TIGR and RAP-DB rice genome annotation databases. This format makes it easy to compare closely related GTs within different families as well as perform global comparisons between sets of related families. .
SUBA: Arabidopsis SubCellular Proteomic Database
The SubCellular Proteomic Database (SUBA) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations.
Maintained and hosted by Plant Energy Biology, UWA.
ARAMEMNON: The Plant Membrane Protein Database
ARAMEMNON is a database about all putative membrane proteins of Arabidopsis, rice and about some 4800 putative membrane proteins of ~270 other seed plants.
Maintained and hosted by the Flügge Lab, Univ. of Cologne.
PhosPhAt: The Arabidopsis Protein Phosphorylation Site Database
The Arabidopsis Protein Phosphorylation Site Database contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments from different research groups.
Maintained and hosted by the Shulze Lab, MPIMP, Golm-Potsdam.
