JBEI News
Blanch, H. W., et al., Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute. ACS Chemical Biology, 3(1), 17–20, 2008.
Borglin, S et al., Overcoming the Anaerobic Hurdle in Phenotypic Microarrays: Generation and Visualization of Growth Curve Data for Desulfovibrio vulgaris Hildenborough. Journal of Microbiological Methods. 78(2), 159-168, February 2009.
Cao, P.J. et al., Construction of a Rice Glycosyltransferases Phylogenomic Database and Identification of Rice-Diverged Glycosyltransferases. Molecular Plant. 1(5), 858–877, 2008.
Chhabra S.R., et al., A Network of Protein-Protein Interactions and a Revised Bioenergetic Model of the Model Sulfate Reducer Desulfovibrio vulgaris Hildenborough. Genome Biology, In Press 2008.
Dibble, D.C.; Bartelt, N.; Simmons, B.A. Determination of Cellulase Hydrolysis Kinetics using in situ Atomic Force Microscopy, In Press 2008.
Dietrich, J., et al., A Novel Semi-biosynthetic Route for Artemisinin Production Using Engineered Substrate-Promiscuous P450BM3. ACS Chemical Biology, 4(4), 261–267, April 2009.
Fortman, J. L., et al., Biofuel Alternatives to Ethanol: Pumping the Microbial Well. Trends in Biotechnology, 26(7), 375–381, 2008.
Garcia, D. E., et al., Separation and Mass Spectrometry in Microbial Metabolomics. Current Opinion in Microbiology, 11(3), 233–239, 2008.
Geshi, N. et al., Glycosyltranfserases Involved in the Plant Cell Wall Polysaccharides Biosynthesis. Glycobiology. 18(12), 973, 2008.
Jensen, J. K., et al., Identification of a Xylogalacturonan Xylosyltransferase involved in Pectin Biosynthesis in Arabidopsis. Plant Cell, 20(5), 1289–1302, 2008.
Keasling, J., From yeast to alkaloids. Nature Chemical Biology. 4(9): 524–525, 2008
Keasling, J. D. and H. J. Chou, Metabolic engineering delivers next-generation biofuels. Nature Biotechnology. 26(3), 298-299, 2008.
Kent, M.S. et al., Effect of Agitation/Flow on the enzymatic Digestion of Cellulose: A Structural Study by SANS. ACS Chemical Biology. In Press 2009.
Kirby, J. and Keasling, J.D., Biosynthesis of Plant Isoprenoids: Perspectives for Microbial Engineering. Annual Review of Plant Biology, 60(TBD), 2009.
Lee, S.K., et al., Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Current Opinion in Biotechnology. 19(6):556-563, 2008
Mukhopadhyay A, et al., Importance of systems biology in engineering microbes for biofuel production. Current Opinion in Biotechnology. 19(3):228-34, 2008.
Okumoto S, Takanaga H, and Frommer WB, Quantitative imaging for discovery and assembly of the metabo-regulome. New Phyotlogist. 180(2): 271–295, 2008.
Pereira et al., Crystal Structure of endoglucanase Cel9A from the thermoacidophilic Alicyclobacillus acidocaldarius, Acta Crystallogrphica sectino D, In Review 2009.
Shaikh A.S. et al., Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein. Analytical Chemistry, 80(3):886-90, 2008.
Shui WQ, Sheu L, Liu J, et al. Membrane proteomics of phagosomes suggests a connection to autophagy. Proceedings of the National Academy of Sciences of the United States of America. 105(44): 16952–16957, 2008.
Simmons, B.A., Loque, D., and Blanch, H.W., Biomass feedstocks for biofuel production: opportunities and challenges. Genome Biology. 9(12): 242.1-242.6, December 2008.
Singh, S.; Simmons, B.A. Role of Biomass Structure and Composition in Ionic Liquid Pretreatment, In Press 2009.
Singh, S.; Simmons, B.A. Characterization of the Plant Cell Wall using Atomic Force Microscopy, In Press 2009.
Singh, S.; Simmons, B.A. Visualization of Biomass Solubilization and Cellulose Regeneration during Ionic Liquid Pretreatment of Switchgrass, Biotechnology and Bioengineering. In Press 2009.
Tang, Y. J., et al., Advances in analysis of cellular metabolic network and fluxes via 13C isotopic labeling. Mass Spectrometry Reviews, 28(2), 362-375, March-April 2009 .
Tang, Y. J., et al., Metabolic Flux Analysis of Shewanella spp. Reveals Evolutionary Robustness in Central Carbon Metabolism. Biotechnology and Bioenegineering, 102(4), 1161-1169, March 2009.
Tang, Y. J., et al., Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strain. Biotechnology and Bioenegineering, 102(5), 1377-1386, April 2009.
Weckwerth, W et al., The Multinational Arabidopsis Steering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology. J. Proteome Res. (Editorial), 7(10), 4209-4210, 2008.